A clue to the matrix? Why would the matrix give a shit about giving clues? Atleast science did hard work to come to their conclusions not "clues" the universe gave them about itself. It just is and we used pattern recognition among other things to figure it out. And tbh I'm giving us more credit, you seem to think humans are stupid and just lucked into this stuff, I think we worked out, survived, persevered and made nature our bitch